Recent publications

Reviews & Book chapters

ChIP-Rx: Arabidopsis chromatin profiling using quantitative ChIP-seq.

Vidal A, Concia L, Rougée M, ✉️Bourbousse C and ✉️Barneche F. (2024) Methods in Molecular Biology: Plant Chromatin Dynamics, Methods and Protocols, 2nd Edition. In press

Light, chromatin, action: nuclear events regulating light signaling in Arabidopsis.

Patitaki E., Schivre G., Zioutopoulou A., Perrella G., Bourbousse C., ✉️Barneche F. and ✉️Kaiserli E. New Phytologist (2022) 236(2), 333- 349. doi: 10.1111/nph.18424

Plant chromatin catches the sun.

✉️Bourbousse, C., ✉️Barneche, F., and Laloi, C. Frontiers in Plant Science (2020) doi: 10.3389/fpls.2019.01728

Multifaceted activities of the plant SAGA complex.

KD Grasser✉️, V Rubio✉️and F Barneche✉️ BBA Gene Regulatory Mechanisms (2020) doi: 10.1016/j.bbagrm.2020.194613

Profiling Developmentally and Environmentally Controlled Chromatin Reprogramming.

Bourbousse C, Benhamed M and F. Barneche✉️ Methods in Molecular Biology (2018). 2018;1675:3-30. doi: 10.1007/978-1-4939-7318- 7_1

Unreeling the chromatin thread: a genomic perspective on organization around the periphery of the Arabidopsis nucleus.

Barneche F, Baroux C. Genome Biology (2017) 18(1):97 doi: 10.1186/s13059-017-1239-6

Research Articles

The UBP5 histone H2A deubiquitinase counteracts PRC2-mediated repression to regulate Arabidopsis development and stress responses.

Godwin J., March E., Govindasamy M., Bourbousse C., Wolff L, Fort A., Krzyszton M., López J., Swiezewski S., Barneche F., Schubert D., and Farrona S. Nature Communications (2024) 15, 667 doi: 10.1038/s41467-023-44546-8

The TELOMERE REPEAT BINDING proteins TRB4 and TRB5 function as transcriptional activators of PRC2-controlled genes to regulate plant development.

Amiard S, Feit L, Vanrobays E, Simon L, Le Goff S, Loizeau L, Wolff L, Butter F, Bourbousse C, Barneche F, Tatout C, Probst AV. Plant Communications (2024) Apr 1:100890. doi: 10.1016/j.xplc.2024.100890

Genome-wide evidence of the role of Paf1C in transcription elongation and histone H2B monoubiquitination in Arabidopsis.

Blanco-Touriñán N., Pérez-Alemany J., Bourbousse C., Latrasse D., Ait-Mohamed O., Benhamed M., Barneche F., Blázquez MA, Gallego-Bartolomé J., and Alabadí D. Plant Physiology (2024) kiae041, doi: 10.1093/plphys/kiae04

Histone H1 protects telomeric repeats from H3K27me3 invasion in Arabidopsis.

Teano G., Concia L., Carron L., Wolff L., Adamusová K., Fojtová M., Bourge M., Kramdi A., Colot V., Grossniklaus U., Bowler C., Baroux C., Carbone A., Probst A.V., Procházková Schrumpfová P., Fajkus J., Amiard S., Grob S., Bourbousse C. and F. Barneche✉️ Cell Reports (2023) 10.1016/j.celrep.2023.112894

Hypometabolism to survive the long polar night and subsequent successful return to light in the diatom Fragilariopsis cylindrus.

Joli N., Concia L., Mocaer K., Guterman J., Laude J., Guerin S., Sciandra T., Bruyant, Ait-Mohamed, Beguin, Forget, Bourbousse C., Lacour, Bailleul, Nef, Savoie, Tremblay, Campbell, Lavaud, Schwab, Babin, Bowler C. New Phytologist (2023) doi: 10.1111/nph.19387

Advanced methods for segmentation of Arabidopsis nuclei and chromocenters.

Schivre G, Johann to Berens P, Barneche F, ✉️ Bourbousse C, and ✉️ Molinier J. Epigenomes (2022) doi:10.3390/epigenomes6040034

Intracellular reactive oxygen species trafficking participates to seed dormancy alleviation in Arabidopsis seeds.

Jurdak, R.; Rodrigues, G.; Chaumont, N.; Schivre, G.; Bourbousse, C.; Barneche, F; Bou Dagher Kharrat, M.; Bailly, C. New Phytologist (2022) 234: 850-866 doi: 10.1111/nph.18038

Topoisomerase VI participates to a chromatin boundary function that prevents heterochromatin spreading into nearby euchromatic islands.

Méteignier LV, Lecampion C, Vrieta C, Térèsee M, Rougée M, Breuerh C, Soubigou-Taconnat L, Sugimoto K, Barneche F and C Laloi PNAS (2022) 119(27):e2001290119. doi: 10.1073/pnas.2001290119.33

DET1-mediated COP1 regulation avoids HY5 activity over second-site targets to tune plant photomorphogenesis.

*Cañibano, E., *Bourbousse, C., Garcia-Leon, M., Wolff, L., Garcia-Baudino, C., Barneche, F., Rubio, V., and Fonseca, S. Molecular Plant (2021). 12, 3: 292-294 doi : 10.1016/j.molp.2021.03.009

Polycomb-dependent differential chromatin compartmentalization determines gene coregulation in Arabidopsis.

Huang Y, Sicar S, Ramirez-Prado JS, Manza-Mianza D, Antunez-Sanchez J, Brik-Chaouche R, Rodriguez-Granados NY, An J, Bergounioux C, Mahfouz MM, Hirt H, Crespi M, Concia L, Barneche F, Amiard S, Probst AV, Gutierrez-Marcos J, Ariel F, Raynaud C, Latrasse D, Benhamed M. Genome Research (2021) 31(7):1230-44. doi: 10.1101/gr.273771.120.

Arabidopsis S2Lb links AtCOMPASS-like and SDG2 activity in H3K4me3 independently from histone H2B monoubiquitination.

*Fiorucci, A., *Bourbousse, C., Concia, L. Rougée M., Layat E., Zabulon G., Deton A.F., Latrasse D., Lombard B., Stroebel D., Lemoine S., Mohammad A., Blugeon C., Loew D., Bailly C., Bowler C., Benhamed M. and F. Barneche✉️ Genome Biology (2019) 20, 100 doi: 10.1186/s13059-019-1705-4

Linker histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis.

Rutowicz K, Lirski M, Mermaz B, Schubert J, Teano G, Mestiri I, Kroten M, Tohnyui F, Fritz S, Grob S, Ringli C, Cherkezeyan L, Barneche F, Jerzmanowski A, Baroux C. Genome Biology (2019) 20: 157. doi:10.1186/s13059-019-1767-3

DET1-mediated degradation of a SAGA-like deubiquitination module controls H2Bub homeostasis.

Nassrallah A., Rougée M., Bourbousse C., Drevensek S., Fonseca S., Iniesto E., Ait-Mohamed O., Deton- Cabanillas A.F., Zabulon G., Ahmed I., Stroebel D., Masson V., Lombard B., Eeckhout D., Gevaert K., Loew D., Genovesio A., Breyton C., de Jaeger G., Bowler C., Rubio V. and F. Barneche✉️ eLife (2018) 2018;7:e37892 doi: 10.7554/eLife.37892

The SlCBL10 calcineurin B-like protein ensures plant growth under salt stress by regulating Na+ and Ca2+ homeostasis.

Egea I, Pineda B, Ortíz-Atienza A, Plasencia FA, Drevensek S, García-Sogo B, Yuste-Lisbona FJ, Barrero J, Atarés A, Flores FB, Barneche F, Angosto T, Capel C, Salinas J, Vriezen W, Esch E, Bowler C, Bolarin MC, Moreno V and Lozano R (2017) Plant Physiology doi:10.1104/pp.17.0160522

The Arabidopsis SWI/SNF protein BAF60 mediates seedling growth control by modulating DNA accessibility.

Jégu T, Veluchamy A, Ramirez-Prado JS, Rizzi-Paillet C, Perez M, Lhomme A, Latrasse D, Coleno E, Vicaire S, Legras S, Jost B, Rougée M, Barneche F, Bergounioux C, Crespi M, Mahfouz M, Hirt H, Raynaud C and Benhamed M. Genome Biology (2017) 18(1):114. doi: 10.1186/s13059-017-1246-7

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