Our Github repository contains the pipelines we set up to analyze:

• ChIP-Seq and Chip-Rx

• RNA-seq

• iCRAQ: a semi-automated tool for nucleus and chromocenter segmentation

• Nucl.eye.D: a fully automated deep-learning tool for nucleus and chromocenter segmentation (J. to Berens, M. Theune, & J. Molinier)

The Skotobox is a 3D print design that aims to construct custom containers for plant in vitro cultures in a lightproof environment. 3D-printed nozzles were designed to prevent any external light from entering, ensuring a completely dark environment for seedling etiolation, while allowing for adequate air exchange.